PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1757s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 296aa    MW: 32308.1 Da    PI: 6.7399
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1757s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17217253135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Cagra.1757s0004.1.p 217 CRHCGTSEksTPMMRRGPEGPRTLCNACGLMWANKGT 253
                          **********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.40273108IPR010399Tify domain
SMARTSM009791.8E-1273108IPR010399Tify domain
PfamPF062004.1E-1278107IPR010399Tify domain
PROSITE profilePS5101712.858141183IPR010402CCT domain
PfamPF062035.6E-15141183IPR010402CCT domain
SMARTSM004011.9E-10211274IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.407211259IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-13213275No hitNo description
Gene3DG3DSA:3.30.50.105.7E-16216258IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.22E-16217266No hitNo description
PfamPF003201.7E-15217253IPR000679Zinc finger, GATA-type
PROSITE patternPS003440217244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MNGLHGNNGG MHIGVPQDPL HMQYEHQGLH HIDNGDGMMD DHTDGGMDEG VETDIPSHPG  60
NIADNRGEVV DRGIENGDQL TLSFQGQVYV FDHVSPEKVQ AVLLLLGGRE VPQTLPTSLG  120
SPHQNNMGLS GTPQRLTVPQ RLASLIRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF  180
TSAKSSNDDS ASTGSDWGSS QSWAVEGSEA QKPEILCRHC GTSEKSTPMM RRGPEGPRTL  240
CNACGLMWAN KGTLRDLSKV PPPQTPQNLP VNKNEDPNLE ADQMIGVAGD MSNSR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0428170.0AY042817.1 Arabidopsis thaliana Unknown protein (MXL8.2) mRNA, complete cds.
GenBankAY0646280.0AY064628.1 Arabidopsis thaliana unknown protein (MXL8.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299922.10.0hypothetical protein CARUB_v10016131mg
SwissprotQ8GXL70.0GAT24_ARATH; GATA transcription factor 24
TrEMBLR0I4990.0R0I499_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.3__2338__AT3G21175.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-177ZIM-like 1